FastSurfer Utilities

• FastSurferCNN: generate_hdf5.py
  • General
  • Checkpoints and configs
  • Optional commands
  • Example Command: Evaluation Single Subject
  • Example Command: Evaluation whole directory
  • Full commandline interface of FastSurferCNN/generate_hdf5.py
• FastSurferCNN: run_model.py
  • Model options
  • Optimizer options
  • Data options
  • Training options
  • Misc. Options
  • Example Command: Training Default FastSurferVINN
  • Example Command: Training FastSurferVINN (Single Resolution)
  • Example Command: Training FastSurferCNN
  • Full commandline interface of FastSurferCNN/run_model.py