CorpusCallosum.cc_visualization

CorpusCallosum.cc_visualization.load_contours_from_template_dir(template_dir, resolution, smoothing_window)

Load all contours and thickness data from a template directory.

CorpusCallosum.cc_visualization.load_plot_values(values_file)

Load a one-column CSV with one header row.

CorpusCallosum.cc_visualization.main(template_dir, output_dir, resolution=1.0, smoothing_window=5, colormap='red_to_yellow', color_range=None, legend=None, twoD=False, values_file=None, mode='thickness', log_scale=False, upper_threshold=None, threshold_color='gray', title=None, output_name=None)

Visualize corpus callosum templates in 2D or 3D.

CorpusCallosum.cc_visualization.make_parser()

Create a command line parser for the visualization pipeline.

CorpusCallosum.cc_visualization.options_parse()

Parse command line arguments for the pipeline.