Running Modules Directly

run_fastsurfer.sh runs all modules for you. These pages describe the scripts of the individual modules, for experts who want to call them directly, for example to parallelize batch processing. What each module does is described in Modules.

• FastSurferCNN: run_prediction.py
• CerebNet: run_prediction.py
• HypVINN: run_prediction.py
• CorpusCallosum: fastsurfer_cc.py
• Surface Pipeline: recon-surf.sh
• Surface Registration: recon-surfreg.sh