Training

Scripts for training FastSurfer’s segmentation networks: creating the training datasets and training the models. They are only needed to retrain or extend the networks; processing images uses the trained checkpoints that FastSurfer downloads.

• FastSurferCNN: generate_hdf5.py
  • Full commandline interface of FastSurferCNN/generate_hdf5.py
• FastSurferCNN: run_model.py
  • Model options
  • Optimizer options
  • Data options
  • Training options
  • Misc. Options
  • Example Command: Training Default FastSurferVINN
  • Example Command: Training FastSurferVINN (Single Resolution)
  • Example Command: Training FastSurferCNN
  • Full commandline interface of FastSurferCNN/run_model.py