FastSurfer API

Note

Warning The FastSurfer API is in development and will change without warning. Please consider no internal module, class or function final at this point!

• FastSurferCNN
  • FastSurferCNN.download_checkpoints
  • FastSurferCNN.generate_hdf5
  • FastSurferCNN.inference
  • FastSurferCNN.quick_qc
  • FastSurferCNN.reduce_to_aseg
  • FastSurferCNN.run_prediction
  • FastSurferCNN.segstats
  • FastSurferCNN.version
• FastSurferCNN.data_loader
  • FastSurferCNN.data_loader.augmentation
  • FastSurferCNN.data_loader.conform
  • FastSurferCNN.data_loader.data_utils
  • FastSurferCNN.data_loader.dataset
  • FastSurferCNN.data_loader.loader
• FastSurferCNN.models
  • FastSurferCNN.models.interpolation_layer
  • FastSurferCNN.models.losses
  • FastSurferCNN.models.networks
  • FastSurferCNN.models.sub_module
• FastSurferCNN.utils
  • FastSurferCNN.utils.arg_types
  • FastSurferCNN.utils.checkpoint
  • FastSurferCNN.utils.common
  • FastSurferCNN.utils.load_config
  • FastSurferCNN.utils.logging
  • FastSurferCNN.utils.lr_scheduler
  • FastSurferCNN.utils.mapper
  • FastSurferCNN.utils.meters
  • FastSurferCNN.utils.metrics
  • FastSurferCNN.utils.misc
  • FastSurferCNN.utils.parser_defaults
  • FastSurferCNN.utils.run_tools
  • FastSurferCNN.utils.threads
• CerebNet
  • CerebNet.apply_warp
  • CerebNet.inference
  • CerebNet.run_prediction
• CerebNet.dataloader
  • CerebNet.data_loader.augmentation
  • CerebNet.data_loader.data_utils
  • CerebNet.data_loader.dataset
  • CerebNet.data_loader.loader
• CerebNet.datasets
  • CerebNet.datasets.generate_hdf5
  • CerebNet.datasets.load_data
  • CerebNet.datasets.utils
  • CerebNet.datasets.wm_merge_clean
• CerebNet_models
  • CerebNet.models.networks
  • CerebNet.models.sub_module
• CerebNet.utils
  • CerebNet.utils.checkpoint
  • CerebNet.utils.load_config
  • CerebNet.utils.lr_scheduler
  • CerebNet.utils.meters
  • CerebNet.utils.metrics
  • CerebNet.utils.misc
• HypVINN
  • HypVINN.inference
  • HypVINN.run_prediction
• HypVINN.data_loader
  • HypVINN.data_loader.data_utils
  • HypVINN.data_loader.dataset
• HypVINN.models
  • HypVINN.models.networks
• HypVINN.utils
• recon_surf
  • recon_surf.align_points
  • recon_surf.align_seg
  • recon_surf.create_annotation
  • recon_surf.fs_balabels
  • recon_surf.lta
  • recon_surf.map_surf_label
  • recon_surf.N4_bias_correct
  • recon_surf.paint_cc_into_pred
  • recon_surf.rewrite_oriented_surface
  • recon_surf.rewrite_mc_surface
  • recon_surf.rotate_sphere
  • recon_surf.sample_parc
  • recon_surf.smooth_aparc
  • recon_surf.spherically_project_wrapper