Index A | B | C | E | F | G | I | L | M | O | R A applyTransform() (in module fsqc.fsqcUtils) B binarizeImage() (in module fsqc.fsqcUtils) C checkCCSize() (in module fsqc.checkCCSize) checkContrast() (in module fsqc.checkContrast) checkRotation() (in module fsqc.checkRotation) checkSNR() (in module fsqc.checkSNR) checkTopology() (in module fsqc.checkTopology) createScreenshots() (in module fsqc.createScreenshots) createSurfacePlots() (in module fsqc.createSurfacePlots) E evaluateFornixSegmentation() (in module fsqc.evaluateFornixSegmentation) evaluateHippocampalSegmentation() (in module fsqc.evaluateHippocampalSegmentation) evaluateHypothalamicSegmentation() (in module fsqc.evaluateHypothalamicSegmentation) F fsqc.checkCCSize module fsqc.checkContrast module fsqc.checkRotation module fsqc.checkSNR module fsqc.checkTopology module fsqc.createScreenshots module fsqc.createSurfacePlots module fsqc.evaluateFornixSegmentation module fsqc.evaluateHippocampalSegmentation module fsqc.evaluateHypothalamicSegmentation module fsqc.fsqcMain module fsqc.fsqcUtils module fsqc.outlierDetection module G get_help() (in module fsqc.fsqcMain) get_version() (in module fsqc.fsqcMain) I importMGH() (in module fsqc.fsqcUtils) L levelsetsTria() (in module fsqc.fsqcUtils) M module fsqc.checkCCSize fsqc.checkContrast fsqc.checkRotation fsqc.checkSNR fsqc.checkTopology fsqc.createScreenshots fsqc.createSurfacePlots fsqc.evaluateFornixSegmentation fsqc.evaluateHippocampalSegmentation fsqc.evaluateHypothalamicSegmentation fsqc.fsqcMain fsqc.fsqcUtils fsqc.outlierDetection O outlierDetection() (in module fsqc.outlierDetection) outlierTable() (in module fsqc.outlierDetection) R readAparcStats() (in module fsqc.outlierDetection) readAsegStats() (in module fsqc.outlierDetection) readHippocampusStats() (in module fsqc.outlierDetection) readHypothalamusStats() (in module fsqc.outlierDetection) readLTA() (in module fsqc.fsqcUtils) returnFreeSurferColorLUT() (in module fsqc.fsqcUtils) run_fsqc() (in module fsqc.fsqcMain)