Index

A

affine_dist() (in module neuroreg.transforms) (neuroreg.transforms.LTA method) affine_from_header() (in module neuroreg.segreg.atlas)

AFNIAffine (class in neuroreg.transforms) ANTsMatTransform (class in neuroreg.transforms) available_atlases() (in module neuroreg.segreg.atlas)

B

bbreg() (in module neuroreg)

build_flipped_centroid_targets() (in module neuroreg.segreg.centroids)

C

collect_joint_centroids() (in module neuroreg.segreg.centroids) compute_ras_centroids_from_seg() (in module neuroreg.segreg.centroids) compute_voxel_centroids_from_seg() (in module neuroreg.segreg.centroids) concat() (neuroreg.transforms.LTA method) convert_numpy_to_json_serializable() (in module neuroreg.segreg.io)

convert_transform_type() (in module neuroreg.transforms) coreg() (in module neuroreg) (in module neuroreg.imreg.coreg) corner_dist() (in module neuroreg.transforms) (neuroreg.transforms.LTA method)

D

decompose() (neuroreg.transforms.LTA method)

decompose_transform() (in module neuroreg.transforms) det (neuroreg.transforms.LTA property)

E

export_segmentation_target() (in module neuroreg.segreg.register)

F

find_affine() (in module neuroreg.segreg.points) find_rigid() (in module neuroreg.segreg.points) find_rigid_anisotropic_scale() (in module neuroreg.segreg.points) find_rotation() (in module neuroreg.segreg.points) find_similarity() (in module neuroreg.segreg.points) find_translation() (in module neuroreg.segreg.points) from_lta() (neuroreg.transforms.AFNIAffine class method) (neuroreg.transforms.ANTsMatTransform class method) (neuroreg.transforms.FSLMat class method) (neuroreg.transforms.ITKTransform class method) (neuroreg.transforms.NiftyRegTransform class method) (neuroreg.transforms.RegisterDat class method) (neuroreg.transforms.XFM class method)

from_matrix() (neuroreg.transforms.LTA class method) FSLMat (class in neuroreg.transforms)

G

geometry_from_image() (in module neuroreg.segreg.io) GeometryDict (class in neuroreg.segreg.io)

get_affine() (in module neuroreg.transforms) get_cortex_lr_labels() (in module neuroreg.segreg.labels) get_cortex_lr_pairs() (in module neuroreg.segreg.labels)

I

invert() (neuroreg.transforms.LTA method)

ITKTransform (class in neuroreg.transforms)

L

load_atlas_centroids() (in module neuroreg.segreg.atlas) load_atlas_data() (in module neuroreg.segreg.atlas) load_atlas_target() (in module neuroreg.segreg.atlas)

load_fsaverage_centroids() (in module neuroreg.segreg.atlas) load_fsaverage_data() (in module neuroreg.segreg.atlas) LTA (class in neuroreg.transforms)

M

main() (in module neuroreg.cli.bbreg) (in module neuroreg.cli.coreg) (in module neuroreg.cli.lta) (in module neuroreg.cli.mri) (in module neuroreg.cli.multireg) (in module neuroreg.cli.robreg) (in module neuroreg.cli.segreg) (in module neuroreg.cli.sys_info) (in module neuroreg.cli.vol2vol) module neuroreg.bbreg.register neuroreg.cli.bbreg neuroreg.cli.coreg neuroreg.cli.lta neuroreg.cli.mri neuroreg.cli.multireg neuroreg.cli.robreg neuroreg.cli.segreg neuroreg.cli.sys_info neuroreg.cli.vol2vol neuroreg.imreg.coreg neuroreg.imreg.robreg neuroreg.segreg.atlas neuroreg.segreg.centroids neuroreg.segreg.io neuroreg.segreg.labels neuroreg.segreg.points neuroreg.segreg.register

multireg() (in module neuroreg)

N

neuroreg.bbreg.register module neuroreg.cli.bbreg module neuroreg.cli.coreg module neuroreg.cli.lta module neuroreg.cli.mri module neuroreg.cli.multireg module neuroreg.cli.robreg module neuroreg.cli.segreg module neuroreg.cli.sys_info module

neuroreg.cli.vol2vol module neuroreg.imreg.coreg module neuroreg.imreg.robreg module neuroreg.segreg.atlas module neuroreg.segreg.centroids module neuroreg.segreg.io module neuroreg.segreg.labels module neuroreg.segreg.points module neuroreg.segreg.register module NiftyRegTransform (class in neuroreg.transforms)

R

r2r() (neuroreg.transforms.LTA method) read() (neuroreg.transforms.AFNIAffine class method) (neuroreg.transforms.ANTsMatTransform class method) (neuroreg.transforms.FSLMat class method) (neuroreg.transforms.ITKTransform class method) (neuroreg.transforms.LTA class method) (neuroreg.transforms.NiftyRegTransform class method) (neuroreg.transforms.RegisterDat class method) (neuroreg.transforms.XFM class method) read_centroids_json() (in module neuroreg.segreg.io) read_target_json() (in module neuroreg.segreg.io)

register_gd_pyramid() (in module neuroreg.imreg.coreg) register_irls_pyramid() (in module neuroreg.imreg.robreg) register_points() (in module neuroreg.segreg.points) register_surface() (in module neuroreg.bbreg.register) RegisterDat (class in neuroreg.transforms) RegistrationResult (class in neuroreg.segreg.register) rigid_dist() (in module neuroreg.transforms) (neuroreg.transforms.LTA method) robreg() (in module neuroreg) (in module neuroreg.imreg.robreg) run() (in module neuroreg.cli.sys_info)

S

segreg() (in module neuroreg) (in module neuroreg.segreg.register)

sphere_dist() (in module neuroreg.transforms) (neuroreg.transforms.LTA method)

T

TargetFile (class in neuroreg.segreg.io) to_lta() (neuroreg.transforms.AFNIAffine method) (neuroreg.transforms.ANTsMatTransform method) (neuroreg.transforms.FSLMat method) (neuroreg.transforms.ITKTransform method) (neuroreg.transforms.NiftyRegTransform method) (neuroreg.transforms.RegisterDat method) (neuroreg.transforms.XFM method)

V

v2v() (neuroreg.transforms.LTA method)

W

write() (neuroreg.transforms.AFNIAffine method) (neuroreg.transforms.ANTsMatTransform method) (neuroreg.transforms.FSLMat method) (neuroreg.transforms.ITKTransform method) (neuroreg.transforms.LTA method) (neuroreg.transforms.NiftyRegTransform method) (neuroreg.transforms.RegisterDat method) (neuroreg.transforms.XFM method)

write_centroids_json() (in module neuroreg.segreg.io) write_target_json() (in module neuroreg.segreg.io)

X

XFM (class in neuroreg.transforms)