CLI modules
===========

This page documents the installed console commands from the live parser
objects so the Sphinx reference stays aligned with the CLI help text.

``robreg``
----------

.. argparse::
   :module: neuroreg.cli.robreg
   :func: _build_parser
   :prog: robreg

Python module
~~~~~~~~~~~~~

.. automodule:: neuroreg.cli.robreg
   :members: main

``multireg``
------------

.. argparse::
   :module: neuroreg.cli.multireg
   :func: _build_parser
   :prog: multireg

Python module
~~~~~~~~~~~~~

.. automodule:: neuroreg.cli.multireg
   :members: main

``coreg``
---------

.. argparse::
   :module: neuroreg.cli.coreg
   :func: _build_parser
   :prog: coreg

Python module
~~~~~~~~~~~~~

.. automodule:: neuroreg.cli.coreg
   :members: main

``bbreg``
----------

.. argparse::
   :module: neuroreg.cli.bbreg
   :func: _build_parser
   :prog: bbreg

Python module
~~~~~~~~~~~~~

.. automodule:: neuroreg.cli.bbreg
   :members: main

``vol2vol``
------------

.. argparse::
   :module: neuroreg.cli.vol2vol
   :func: _build_parser
   :prog: vol2vol

Python module
~~~~~~~~~~~~~

.. automodule:: neuroreg.cli.vol2vol
   :members: main

``segreg``
----------

.. argparse::
   :module: neuroreg.cli.segreg
   :func: _build_parser
   :prog: segreg

Python module
~~~~~~~~~~~~~

.. automodule:: neuroreg.cli.segreg
   :members: main

``mri``
-------

.. argparse::
   :module: neuroreg.cli.mri
   :func: _build_parser
   :prog: mri

``mri mask``
~~~~~~~~~~~~

.. argparse::
   :module: neuroreg.cli.mri
   :func: _build_parser
   :prog: mri mask
   :path: mask

``mri info``
~~~~~~~~~~~~

.. argparse::
   :module: neuroreg.cli.mri
   :func: _build_parser
   :prog: mri info
   :path: info

``mri diff``
~~~~~~~~~~~~

.. argparse::
   :module: neuroreg.cli.mri
   :func: _build_parser
   :prog: mri diff
   :path: diff

``mri binarize``
~~~~~~~~~~~~~~~~

.. argparse::
   :module: neuroreg.cli.mri
   :func: _build_parser
   :prog: mri binarize
   :path: binarize

Python module
~~~~~~~~~~~~~

.. automodule:: neuroreg.cli.mri
   :members: main

``lta``
-------

.. argparse::
   :module: neuroreg.cli.lta
   :func: _build_parser
   :prog: lta

``lta diff``
~~~~~~~~~~~~

.. argparse::
   :module: neuroreg.cli.lta
   :func: _build_parser
   :prog: lta diff
   :path: diff

``lta invert``
~~~~~~~~~~~~~~

.. argparse::
   :module: neuroreg.cli.lta
   :func: _build_parser
   :prog: lta invert
   :path: invert

``lta concat``
~~~~~~~~~~~~~~

.. argparse::
   :module: neuroreg.cli.lta
   :func: _build_parser
   :prog: lta concat
   :path: concat

``lta convert``
~~~~~~~~~~~~~~~

.. argparse::
   :module: neuroreg.cli.lta
   :func: _build_parser
   :prog: lta convert
   :path: convert

Python module
~~~~~~~~~~~~~

.. automodule:: neuroreg.cli.lta
   :members: main

``neuroreg-sys_info``
---------------------

.. argparse::
   :module: neuroreg.cli.sys_info
   :func: _build_parser
   :prog: neuroreg-sys_info

Python module
~~~~~~~~~~~~~

.. automodule:: neuroreg.cli.sys_info
   :members: main, run