Changes

v0.8.0-beta

  • general code revision incl. changes in command-line interface and major documentation updates

v0.4.0-beta

  • fundamental revision incl. changes in command-line interface

v0.3.0-beta

  • introduced logging

  • full lapy integration

  • name change: subfieldDNA –> hippocampal shapetools (briefly: shapetools)

  • support for ASHS segmentations

  • mandatory lut command line argument

  • dropped hsflist command line argument

  • changes in default names for output folders and files

v0.2.0-beta

  • re-introduced remeshing as a preprocessing step; requires additional python packages pyvista and pyacvd. See README.md.

  • added sheet selection argument for mapValues() function, plus output of interior and exterior surfaces.

  • starting with this version, the sign of the mean curvature has changed to comply with Freesurfer conventions; what was negative is now positive and vice versa.

v0.1.1-beta

  • standalone functionality for mapValues() function

  • curvature output for interior and exterior surfaces

v0.1.0-beta

  • direction of x, y, z dimensions for output files in the thickness folder has changed:

    • x is now from medial to lateral (i.e. Presubiculum to CA3)

    • y is now from posterior to anterior

    • z is now from inferior to superior

  • curvature and subfield label overlays as additional default outputs in the thickness folder

  • introduction of the mapValues() function to project volume-based data onto the hippocampal mid-surface (needs to be run separately)

  • introduction of lapy dependency

  • hsflist command line argument is no longer necessary

  • changes and improvements in various algorithms and parameters