Changelog ========= Version 2.0.2 ------------- - This fixes an issue with the outlier module, which did not run for FastSurfer output due to incorrect expectations for names of stats files. Version 2.0.1 ------------- - This fix addresses two minor issues where output was omitted for the SNR computation and the fornix evaluation whenever hires inputs were used. Version 2.0.0 ------------- - Name changes for the toolbox, repository, package, and scripts: the toolbox has been renamed to "fsqc tools", the python package name "qatoolspython" has been changed to "fsqc", and the "qatools.py" script has been renamed to "run_fsqc". The github repository is now located at "https://github.com/Deep-MI/fsqc", but requests to the old "https://github.com/Deep-MI/qatools-python" repository will be redirected. - Name changes for output files (replacing 'qatools' with 'fsqc'). - Interface changes: importing and running the scripts has changed. In particular, `run_fsqc` is now an executable file and replaces the `qatools` or `qatools.py` command. `run_fsqc()` is now also a function that can be used in a Python environment. See `here `_ for details. - New names for main and dev branches: the main (default) branch is now called `stable` (was: `freesurfer-module-releases`), and the dev branch is now called `dev` (was: `freesurfer-module-dev`). The old branches will still be kept for a while in a deprecation state, but will not receive further updates or support. - Screenshots are now in radiological orientation (left is right). Before version 2.0, screenshots were in neurological orientation (left is left). - Addition of skullstrip, surfaces, hippocampus, and hypothalamus modules. - Improved logging, error handling, and testing frameworks. - Enhanced containerization support (docker, singularity, dockerhub). - Updated requirements, easier installation of the package and its dependencies, availability of the package on `pypi.org `_. - FreeSurfer is no longer required as a dependency (except for the optional 'shape analysis' module, which relies on the brainprint package). - Compatibility with earlier versions is not preserved.