Surface registration: recon-surfreg.sh ====================================== ``recon-surfreg.sh`` adds the spherical registration (``?h.sphere`` and ``?h.sphere.reg``) to a subject that was processed with ``--no_surfreg``. The registration to FreeSurfer's ``fsaverage`` is needed for any cross-subject analysis of thickness maps, so this lets you add it later without running the surface reconstruction again. It needs a FreeSurfer license, like the surface reconstruction. Usage: .. code-block:: text /recon_surf/recon-surfreg.sh --sd \ --sid --fs_license Full commandline interface of recon-surfreg.sh ---------------------------------------------- .. command-output:: ./recon_surf/recon-surfreg.sh --help :cwd: /../